Table 2 COG functional categories of Lactobacillus rhamnosus Pen genome
#COG class | Description | Count | % |
|---|---|---|---|
Information storage and processing | |||
[J] | Translation, ribosomal structure and biogenesis | 153 | 5.4 |
[A] | RNA processing and modification | 0 | 0.0 |
[K] | Transcription | 208 | 7.3 |
[L] | Replication, recombination and repair | 135 | 4.8 |
[B] | Chromatin structure and dynamics | 0 | 0.0 |
Cellular processes and signaling | |||
[D] | Cell cycle control, cell division, chromosome partitioning | 34 | 1.2 |
[Y] | Nuclear structure | 0 | 0.0 |
[V] | Defense mechanisms | 101 | 3.6 |
[T] | Signal transduction mechanisms | 97 | 3.4 |
[M] | Cell wall/membrane/envelope biogenesis | 130 | 4.6 |
[N] | Cell motility | 9 | 0.3 |
[Z] | Cytoskeleton | 0 | 0.0 |
[W] | Extracellular structures | 0 | 0.0 |
[U] | Intracellular trafficking, secretion, and vesicular transport | 23 | 0.8 |
[O] | Posttranslational modification, protein turnover, chaperones | 57 | 2.0 |
Metabolism | |||
[C] | Energy production and conversion | 91 | 3.2 |
[G] | Carbohydrate transport and metabolism | 339 | 12.0 |
[E] | Amino acid transport and metabolism | 195 | 6.9 |
[F] | Nucleotide transport and metabolism | 87 | 3.1 |
[H] | Coenzyme transport and metabolism | 57 | 2.0 |
[I] | Lipid transport and metabolism | 62 | 2.2 |
[P] | Inorganic ion transport and metabolism | 103 | 3.6 |
[Q] | Secondary metabolites biosynthesis, transport and catabolism | 27 | 1.0 |
Poorly characterized | |||
[R] | General function prediction only | 303 | 10.7 |
[S] | Function unknown | 211 | 7.5 |