Table 1 Presence and absence of major virulence factors in HP14039 complete genome and other hpNEAfrica draft genomes (“+” means presence and “–” means absence)
From: The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039
Virulence factors | HP14039 | HP01234 | HP07036 | HP08058 | HP08061 | HP08074 | HP11049 | HP13005 | HP13050 | HP13068 | HP15005 | HP98490 | HP99255 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
cag-PAI | – | – | + | – | + | – | – | +a | – | + | – | + | – |
vacA | + | + | + | + | + | + | + | + | + | + | + | + | + |
dupA | + | + | – | – | – | +b | – | – | – | – | – | – | – |
iceA | + | + | + | – | – | + | + | + | – | + | + | + | + |
babA | + | + | + | + | – | +b | + | +b | +b | +b | – | + | – |
babB | + | – | + | + | +b | +b | – | – | – | +b | + | – | – |
babC | – | + | – | – | +b | – | – | – | – | – | – | – | + |
sabA | + | + | + | + | + | + | + | + | + | + | + | + | + |
oipA | + | + | + | + | + | + | + | + | + | + | + | + | + |
alpA | + | + | + | + | + | + | + | + | + | + | + | + | + |
alpB | + | + | + | + | + | + | + | + | + | + | + | + | + |
hopZ | + | + | + | + | + | + | + | + | + | + | + | + | + |
napA | + | + | + | + | + | + | + | + | + | + | + | + | + |
tieA/hp0986 | – | – | – | – | – | – | – | – | – | – | – | – | – |
ctkA/jhp0940 | – | – | – | – | – | – | – | – | – | – | – | – | – |