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Table 3 Prophage content of S. sonnei (FC1653) analyzed using PHAST tool

From: Complete genome analysis of clinical Shigella strains reveals plasmid pSS1653 with resistance determinants: a triumph of hybrid approach

Region Length (Kb) CDS GC content (%) Position Completenessa Possible phagesb Accession number
1 31.9 44 50.44 2,093,301–2,125,236 Intact Aggregatibacter_S1249 (4) NC_013597
2 16 10 51.97 2,127,662–2,143,700 Questionable Escherichia_Av_05 (2) NC_025830
3 13.7 19 49.02 2,656,501–2,670,224 Questionable Enterobacteria_phiP27 (4) NC_003356
4 9.9 9 50.68 2,850,233–2,860,210 Incomplete Bacillus_G (2) NC_023719
5 14.7 21 48.72 2,985,856–3,000,602 Incomplete Shigella_Ss_VASD (3) NC_028685
6 24.8 33 51.37 3,194,522–3,219,407 Intact Enterobacteria_mEp460 (6) NC_019716
7 48.7 52 48.90 3,303,427–3,352,149 Intact Salmonella_BPS15Q2 (7) NC_031939
8 22.3 12 51.21 3,615,693–3,638,085 Incomplete Escherichia_Av_05 (2) NC_025830
9 14.4 13 50.42 3,748,403–3,762,850 Incomplete Cronobacter_vB_CsaM_GAP32 (2) NC_019401
10 54.6 66 50.87 3,872,085–3,926,723 Intact Enterobacteria_lambda (20) NC_001416
11 10.4 12 50.08 4,139,568–4,149,969 Questionable Stx2_c_1717 (3) NC_011357
12 26.9 30 51.76 4,213,478–4,240,403 Intact Enterobacteria_phiP27 (13) NC_003356
13 19 24 49.54 4,260,910–4,279,909 Questionable Enterobacteria_SfI (7) NC_027339
14 9.5 11 50.95 4,294,012–4,303,528 Incomplete Gordon_OneUp (2) NC_030917
15 7.9 10 49.00 4,404,915–4,412,855 Incomplete Shigella_Sf6 (1) NC_005344
  1. aPrediction of prophage region, intact (score > 90), questionable (score 70–90) or incomplete (score < 70)
  2. bPhage with the highest number of proteins most similar to those in the region