Table 3 Prophage content of S. sonnei (FC1653) analyzed using PHAST tool
Region | Length (Kb) | CDS | GC content (%) | Position | Completenessa | Possible phagesb | Accession number |
|---|---|---|---|---|---|---|---|
1 | 31.9 | 44 | 50.44 | 2,093,301–2,125,236 | Intact | Aggregatibacter_S1249 (4) | NC_013597 |
2 | 16 | 10 | 51.97 | 2,127,662–2,143,700 | Questionable | Escherichia_Av_05 (2) | NC_025830 |
3 | 13.7 | 19 | 49.02 | 2,656,501–2,670,224 | Questionable | Enterobacteria_phiP27 (4) | NC_003356 |
4 | 9.9 | 9 | 50.68 | 2,850,233–2,860,210 | Incomplete | Bacillus_G (2) | NC_023719 |
5 | 14.7 | 21 | 48.72 | 2,985,856–3,000,602 | Incomplete | Shigella_Ss_VASD (3) | NC_028685 |
6 | 24.8 | 33 | 51.37 | 3,194,522–3,219,407 | Intact | Enterobacteria_mEp460 (6) | NC_019716 |
7 | 48.7 | 52 | 48.90 | 3,303,427–3,352,149 | Intact | Salmonella_BPS15Q2 (7) | NC_031939 |
8 | 22.3 | 12 | 51.21 | 3,615,693–3,638,085 | Incomplete | Escherichia_Av_05 (2) | NC_025830 |
9 | 14.4 | 13 | 50.42 | 3,748,403–3,762,850 | Incomplete | Cronobacter_vB_CsaM_GAP32 (2) | NC_019401 |
10 | 54.6 | 66 | 50.87 | 3,872,085–3,926,723 | Intact | Enterobacteria_lambda (20) | NC_001416 |
11 | 10.4 | 12 | 50.08 | 4,139,568–4,149,969 | Questionable | Stx2_c_1717 (3) | NC_011357 |
12 | 26.9 | 30 | 51.76 | 4,213,478–4,240,403 | Intact | Enterobacteria_phiP27 (13) | NC_003356 |
13 | 19 | 24 | 49.54 | 4,260,910–4,279,909 | Questionable | Enterobacteria_SfI (7) | NC_027339 |
14 | 9.5 | 11 | 50.95 | 4,294,012–4,303,528 | Incomplete | Gordon_OneUp (2) | NC_030917 |
15 | 7.9 | 10 | 49.00 | 4,404,915–4,412,855 | Incomplete | Shigella_Sf6 (1) | NC_005344 |