Table 2 Enrichment NGS metrics
From: Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing
Sample ID | Genome coverage (10x minimum read depth) | Number of variants | Mapped reads | Mean depth |
|---|---|---|---|---|
Patient 1 | 100% | 11 | 465,645 | 1129.8x |
Patient 3 | 35% | 11 | 5984 | 31.7x |
Patient 4 | 100% | 9 | 131,582 | 318.6x |
Patient 6 | 100% | 10 | 793,603 | 1924.6x |
Patient 8 | 100% | 10 | 496,852 | 1206.7 |
Patient 10 | 59% | 9 | 5929 | 15.6x |
Patient 11 | 100% | 10 | 1,270,734 | 3075.3x |
Patient 12 | 100% | 10 | 38,256 | 92.7x |