Table 3 SARS-CoV-2 genomic positions, variant changes, and frequencies across the positive patient cohort

5′-UTR

241

C → T

100%

100%

100%

100%

100%

100%

100%

100%

1a

833

T → C

x

x

x

x

100%

x

100%

100%

1a

1059

C → T

x

x

100%

100%

99%

100%

100%

100%

1a

1758

C → T

x

x

100%

100%

x

x

x

x

1a

1973

C → T

x

x

x

87%

x

x

x

x

1a

3037

C → T

100%

x

100%

100%

100%

100%

100%

100%

1a

3078

C → T

x

89%

x

x

x

x

x

x

1a

4866

G → T

75%

x

x

x

x

x

x

x

1a

6720

C → T

93%

x

x

x

x

x

x

x

1a

8102

G → T

x

100%

x

x

x

x

x

x

1a

9401

T → C

x

x

x

x

x

64%

x

x

1a

9403

T → A

x

x

x

x

x

64%

x

x

1a

10,870

G → T

x

x

100%

100%

x

x

x

x

1a

11,123

G → A

x

x

100%

100%

x

x

x

x

1b

14,408

C → T

100%

x

100%

100%

100%

x

100%

100%

1b

14,877

C → T

x

100%

x

x

x

x

x

x

1b

16,616

C → T

x

x

x

x

100%

x

100%

100%

1b

16,848

C → T

100%

x

x

x

x

x

x

x

1b

18,652

C → A

x

x

x

x

x

83%

x

x

1b

19,989

T → G

x

100%

x

x

x

x

x

x

Spike

21,576

T → G

x

83%

x

x

x

x

x

x

Spike

23,264

G → A

x

75%

x

x

x

x

x

x

Spike

23,403

A → G

100%

100%

100%

100%

100%

100%

100%

100%

Spike

23,603

C → T

82%

x

x

x

x

x

x

x

3a

25,563

G → T

x

100%

100%

100%

100%

100%

100%

100%

3a

25,976

C → A

x

x

x

x

100%

x

100%

100%

8

27,964

C → T

x

x

x

x

100%

x

100%

100%

Nucleoprotein

28,881

G → A

100%

x

x

x

x

x

x

x

Nucleoprotein

28,882

G → A

100%

x

x

x

x

x

x

x

Nucleoprotein

28,883

G → C

100%

x

x

x

x

x

x

x

Nucleoprotein

28,997

C → T

x

100%

x

x

x

x

x

x

Nucleoprotein

29,019

A → T

x

100%

x

x

x

x

x

x

Nucleoprotein

29,364

C → G

x

x

x

x

x

85%

x

x