Table 3 Frequencies of resistance genes related to efflux pumps in the 117 Salmonella Typhimurium studied
Genes | Humans (n = 43) (query cover %) (identity %) | Food (n = 48) (query cover %) (identity %) | Swine (n = 26) (query cover %) (identity %) |
|---|---|---|---|
acrA | 43/43 (100) (91.69) | 48/48 (100) (91.69) | 26/26 (100) (91.69) |
acrB | 43/43 (100) (94.66) | 48/48 (100) (94.66) | 26/26 (100) (94.66) |
macA | 43/43 (100) (88.65–88.84) | 48/48 (100) (88.65–88.84) | 26/26 (100) (88.39–88.84) |
macB | 43/43 (100) (88.60–88.70) | 48/48 (100) (88.70) | 26/26 (100) (88.29–88.70) |
mdtK | 43/43 (100) (99.79) | 48/48 (100) (99.79) | 26/26 (100) (99.16–99.79) |
emrA | 43/43 (100) (99.92–100) | 48/48 (100) (100) | 26/26 (72–100) (98.40–100) |
emrB | 43/43 (100) (95.7) | 48/48 (100) (95.7) | 26/26 (99.80–100) (95.7) |
emrR | 43/43 (100) (93.14) | 48/48 (100) (93.14) | 26/26 (100) (93.14) |
tolC | 43/43 (99–100) (100) | 48/48 (100) (100) | 26/26 (100) (98.78–100) |
mdsA | 43/43 (100) (99.75–100) | 48/48 (100) (100) | 18/26 (100) (100) |
mdsB | 43/43 (100) (100) | 48/48 (100) (100) | 18/26 (100) (100) |
mdfA | 18/43 (100) (87.93) | 39/48 (100) (87.93) | 26/26 (100) (87.93) |
cmlA1 | Not detected | Not detected | 05/26 (100) (99.76) |