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Fig. 2 | Gut Pathogens

Fig. 2

From: The endemic Helicobacter pylori population in Southern Vietnam has both South East Asian and European origins

Fig. 2

A tree showing the core genome relationship between the 83 Vietnamese H. pylori isolates and 42 H. pylori reference genomes. The 83 Vietnamese isolates are indicated by black terminal branches, while classified isolates are shown with coloured terminal branches as follows: hspEastAsia (blue), hpEurope (brown), hspWAfrica (pink), hpNEAfrica (purple), hspAmerind (orange) and hpAsia2 (green). The tree was inferred using the core genome comparison method as implemented in Nullarbor with H. pylori strain 26695 (Accession: NC_000915) used as the reference genome sequence for read mapping. The tree was modified using tools available in FigTree and MEGA-X

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Gut Pathogens

ISSN: 1757-4749