Table 4 SNP number modelling prediction using known Campylobacter genome information in four patients
From: Comparative genomics of Campylobacter jejuni from clinical campylobacteriosis stool specimens
Patient identifier | Isolates (N) | Number of core non-recombinant SNPs (n) | Probability of finding a SNP (p) | Proportion of SNPs found (q) | Number of SNPs if we sampled infinite isolates (T) | Number of isolates to identify 95% of SNPs (N95) |
|---|---|---|---|---|---|---|
1 | 30 | 42 | 0.037 | 0.672 | 62 | 81 |
2 | 23 | 59 | 0.087 | 0.877 | 67 | 33 |
3—outlier ST excluded | 12 | 65 | 0.232 | 0.958 | 68 | 11 |
4 | 26 | 36 | 0.057 | 0.780 | 46 | 51 |