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Fig. 1 | Gut Pathogens

Fig. 1

From: Whole-genome characterization of common rotavirus strains circulating in Vellore, India from 2002 to 2017: emergence of non-classical genomic constellations

Fig. 1Fig. 1Fig. 1

Maximum likelihood trees with bootstrap values for RVA VP7(A), VP4(B), VP6(C), VP1(D), VP2(E), VP3(F), NSP1(G), NSP2(H), NSP3(I), NSP4(J) and, NSP5/6(K) genes. The study sequences are coloured red, the reference classical human, equine-like, DS-1-like G1P[8] and vaccine sequences from GenBank are coloured blue, the animal sequences from GenBank are in green and the recent human sequences from India are in black. Phylogenetic clusters were collapsed for easy visualization and to make comprehensive trees. Clusters in shades of red represent RV gene sequences isolated from human hosts bearing Wa-like (genogroup 1) virus genotype, while clusters in shades of green represent RV gene sequences isolated from animal source bearing Wa-like virus genotype. Clusters in shades of blue represent RV gene sequences isolated from human hosts bearing DS-1-like (genogroup 2) virus genotype, while clusters in shades of purple represent RV gene sequences isolated from animal source bearing DS-1-like virus genotype. Vaccine and tissue culture reassortant clusters are highlighted in orange. Trees were drawn to scale as indicated by the scale bar which represents substitution per nucleotide site

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Gut Pathogens

ISSN: 1757-4749