Table 1 Summary of the RVA strains sequenced from Vellore from year 2002 to 2017. Reassortant genes are marked in bold
Strain | Sequenced | Whole Genome constellation | No. of strains | Total | % | Typing Identification | % Reassortants in genogroups |
|---|---|---|---|---|---|---|---|
G1P[8] | 88 | G1P[8]I1R1C1M1A1N1T1E1H1 | 82 | 82 | 93% | Classical Wa-like | 8% |
G1P[8]I2R1C1MxA1N1T1E1H1 | 1 | 6 | 7% | Reassortant | |||
G1P[8]I1R1C1M1A1N1T1E1E2H1 | 1 | ||||||
G1P[8]I1R1C1M1A2N1T1T2E1H1 | 1 | ||||||
G1P[8]I2R2C2MxA2N2T2E6H2 | 1 | ||||||
G1P[8]I1R1C1A1N2T1E1H1 | 1 | ||||||
G1P[8]I1R1C1M1A1N1T2E1H1 | 1 | ||||||
G12P[8] | 12 | G12P[8]I1R1C1M1A1N1T1E1H1 | 12 | 12 | 100% | Classical Wa-like | |
G12P[4] | 1 | G12P[4]I1R1C1M1A1N1T1E1H1 | 1 | 1 | - | Classical Wa-like | |
G12P[6] | 16 | G12P[6]I1R1C1M1A1N1T1E1H1 | 13 | 13 | 81% | Classical Wa-like | |
G12P[6]I1R2C1M1A1N1T1E1H1 | 1 | 3 | 19% | Reassortant | |||
G12P[6]I1R1C1M2A1N1T1E1H1 | 1 | ||||||
G12P[6]I2R1C1M1A1N1T1E1H1 | 1 | ||||||
G9P[8] | 4 | G9P[8]I1RxI1M1A1N1T1E1H1 | 3 | 3 | - | Classical Wa-like | |
G9P[8]I2R2C2MxA2N2T1E1H2 | 1 | 1 | - | Reassortant | |||
G4P[8] | 1 | G4P[8]I1R1I1M1A1N1T1E1H1 | 1 | 1 | - | Classical Wa-like | |
G4P[6] | 1 | G4P[6]I1R1I1M1AxN1T1E1H1 | 1 | 1 | - | Classical Wa-like | |
G2P[4] | 67 | G2P[4]I2R2C2M2A2N2T2E2H2 | 64 | 64 | 96% | Classical DS-1-like | 14% |
G2P[4]I2RxC2MxA2N2T1E1H2 | 1 | 3 | 4% | Reassortant | |||
G2P[4]I2R2C2M1A2N2T1T2E1E2H1 | 1 | ||||||
G2P[4]I2RxC2MxA2N2T2E6H2 | 1 | ||||||
G2P[8] | 2 | G2P[8]I2R2C2M2A2N2T2E2H2 | 2 | 2 | - | Reassortant | |
G9P[4] | 4 | G9P[4]I2R2C2M2A2N2T2E2H2 | 1 | 1 | - | Classical DS-1-like | |
G9P[4]I2R2C2M2A2N2T2E6H2 | 3 | 3 | - | Reassortant | |||
G6 | 1 | G6P[x]I2RxC2MxAxN2T6E2H3 | 1 | 1 | - | Reassortant | |
P[14] | 2 | GxP[14]I2R2C2M2AxN2T6E2H3 | 1 | 1 | - | Reassortant | |
G8P[14]I2R2C2MxA11N2T6E2H3 | 1 | 1 | - | Reassortant | |||
Total | 199 | Note: 8 partially G or P typed strains were not included in this analysis | |||||