Strain-resolved metagenomic analysis of the gut as a reservoir for bloodstream infection pathogens among premature infants in Singapore

Table 4 Genomic comparisons of Streptococcus agalactiae BSI isolates

Patient 1	Patient 2	Coverage overlap (%)	popANI (%)	Population SNPs	conANI (%)	Interpretation
AD8134	PL2596	92.6139	99.3448	12,620	99.3408	Different strains
AD8134	QA9843	95.9577	99.9896	192	99.9865	Different strains
AD8134	YH3562	92.6158	99.3446	12,623	99.3410	Different strains
AD8134	ZR1676	92.5850	99.3444	12,629	99.3406	Different strains
PL2596	QA9843	89.5652	99.3401	12,197	99.3363	Different strains
PL2596	YH3562	99.9937	100.0000	0	99.9998	Same strain
PL2596	ZR1676	99.9390	99.9971	60	99.9967	Different strains
QA9843	YH3562	89.5625	99.3399	12,201	99.3364	Different strains
QA9843	ZR1676	89.5369	99.3396	12,209	99.3359	Different strains
YH3562	ZR1676	99.9343	99.9972	59	99.9968	Different strains

BSI bloodstream infection, popANIpopulation average nucleotide identity, SNP single nucleotide polymorphism, conANI consensus average nucleotide identity

ISSN: 1757-4749