- Open Access
The neurotoxic effect of clindamycin - induced gut bacterial imbalance and orally administered propionic acid on DNA damage assessed by the comet assay: protective potency of carnosine and carnitine
© El-Ansary et al.; licensee BioMed Central Ltd. 2013
Received: 31 March 2013
Accepted: 9 April 2013
Published: 12 April 2013
Comet assay is a quick method for assessing DNA damage in individual cells. It allows the detection of single and double DNA strand breaks, which represent the direct effect of some damaging agents. This study uses standard comet quantification models to compare the neurotoxic effect of orally administered propionic acid (PA) to that produced as a metabolite of bacterial overgrowth induced by clindamycin. Additionally, the protective effect of carnosine and carnitine as natural dietary supplements is assessed.
Single cell gel electrophoresis (comet assays) were performed on brain cortex and medulla samples after removal from nine groups of hamsters including: a control (untreated) group; PA-intoxicated group; clindamycin treated group; clindamycin-carnosine group and; clindamycin-carnitine group.
There were significant double strand breaks recorded as tail length, tail moment and % DNA damage in PA and clindamycin-treated groups for the cortex and medulla compared to the control group. Neuroprotective effects of carnosine and carnitine were observed. Receiver Operating Characteristics curve (ROC) analysis showed satisfactory values of sensitivity and specificity of the comet assay parameters.
Percentage DNA damage, tail length, and tail moment are adequate biomarkers of PA neurotoxicity due to oral administration or as a metabolite of induced enteric bacterial overgrowth. Establishing biomarkers of these two exposures is important for protecting children’s health by documenting the role of the imbalance in gut microbiota in the etiology of autism through the gut-brain axis. These outcomes will help efforts directed at controlling the prevalence of autism, a disorder recently related to PA neurotoxicity.
The investigation of the environmental contribution towards developmental neurotoxicity is fundamental to identifying the effects of environmental contaminants on humans. Exposure to environmental chemicals may contribute to the development of neurological disorders, especially in children. Animal studies may help identify the etiology of neurotoxicity due to some of these environmental chemicals. Additionally, animal studies can help understanding the protective effects of some dietary supplements against neurotoxicity. Due to the high number of reports of antibiotic exposure, hospitalization, and gastrointestinal disturbances [1–3] in many children with autism spectrum disorders (ASDs), the neurobiological effects of microbiota-produced short-chain fatty acids (SCFAs), such as propionic acid (PA) has been examined [4–7].
Finegold et al. (2010)  demonstrated that there is a significantly greater diversity of bacteria in the feces of autistic subjects compared to control subjects. The increased microflora in autistic children may contain harmful genera or species contributing to the severity of autistic symptoms . Two examples are Bacteroidetes and Firmicutes. The vast majority of species in the Bacteroidetes phylum produce propionic acid and lipopolysaccharides (LPS), which are well-known virulence factors.
The presence and abundance of Clostridium in the intestines of autistic children is well documented. Finegold  hypothesized that the relapse of some autistic children after antibiotic treatment is due to Clostridium spores. The incidence of autism is related to widespread exposure to Clostridium spores, and the increase of multiple cases of autism within a single family is also related to contact with spores . Propionate has been shown to have severe neurological effects in rats [10, 11] and Clostridia produce propionate . Studies by MacFabe et al. (2007)  have demonstrated that injecting propionate directly into specific regions of rat brains in vivo can cause significant behavioral problems.
MacFabe et al. (2007)  postulated that the overuse of antibiotics that has contributed to an increase in pathogenic bacteria of which Clostridium infections could be playing a role in the pathophysiology of autism. Additionally, clindamycin-treated hamsters are predictably susceptible to infection with pathogenic strains of Clostridium difficile and, as an animal model, they parallel most of the important aspects of human C. difficile associated disease (CDAD) . A number of important observations were reported when a small amount of PA was infused into the brains of rodents . Impact on socialization and behavior was also evaluated in a novel gut-mediated autism model . Infusion with small amounts of PA resulted in social impairment, repetitive behavior and obsessive-compulsive behavior .
Concern has been expressed over the alarming increase in the rates of ASDs worldwide. Evaluation of the outcomes of oral administration of PA may aid in the understanding of these disorders. Hence, the present study was undertaken to investigate and evaluate the genotoxic effects associated with the oral administration of PA in comparison to overgrowth of intestinal microbiota induced in hamsters that received clindamycin. The study was extended to investigate the neuroprotective effects of carnosine and carnitine. Evaluation was done at the genotoxic levels through the use of tail length and tail moment to evaluate DNA damage as a marker of neurotoxicity.
Material and methods
Propionic acid, carnosine and carnitine were of analytical grade from Sigma-Aldrich. Clindamycin was purchased from Pharmacia Co., Peapack, NJ, USA.
A total of 54 young male golden Syrian hamsters weighing approximately 80–100 g (8 weeks of age) were used in the present study. Animals were randomly allocated to one of 9 groups consisting of 6 animals each: a control group that received only phosphate buffered saline; an oral buffered PA-treated group that was given a neurotoxic dose of 250 mg/kg body weight/day for 3 days ; a clindamycin-treated group that received a single dose (orogastrically) of 30 mg/kg on experiment day 0; a carnosine-treated group that received a dose of 10 mg/kg body weight/day orally (daily for one week); a carnitine-treated group that received 50 mg/kg body weight/day orally (daily for one week) and; four protected groups were given the same doses of carnosine or carnitine for one week followed by PA for 3 days or a single dose of clindamycin as described above. All groups were kept at a controlled temperature (21 ± 1°C) with ad-libitum access to food and water. Quantitative stool cultures were collected and tested both aerobically and anaerobically on groups of hamsters receiving clindamycin and the untreated controls. All experiments were performed in accordance with national animal care guidelines and were pre-approved by the faculty ethics committee, King Saud University.
Brain tissue preparation
At the end of the experiment, hamsters were anesthetized with carbon dioxide. The brain was removed from the skull and the cortex and medulla were extracted. Brain tissues of the nine groups were kept at −80°C until use.
Single cell gel electrophoresis (comet assay)
Single cell gel electrophoresis or comet assay is a simple, sensitive and rapid method for the detection and quantification of DNA damage . Slides were prepared in duplicate per group and the test was performed for at least 3 different brain (cortex and medulla) samples from each group. For the cell suspension, approximately 4 × 106 cells were mixed with 80 μl of 0.7% low-melting agarose in phosphate-buffered saline (PBS) at 37°C in a microtube, and then spread over a window microscopic slide. The slides were precoated with 150 μl of 0.5% normal-melting agarose in PBS, and were specially designed for this assay. The slides were immediately placed in cold lysis buffer containing 2.5 M sodium chloride (NaCl), 100 mM EDTA sodium salt Na2EDTA, 10 mM Tris (pH 10), and 1% Triton X-100, at 4°C for a minimum of 1 hr. After lysis, the slides were drained and placed in a horizontal gel electrophoresis tank placed in ice, and filled with fresh cold electrophoresis buffer (300 mM sodium hydroxide (NaOH), 1 mM NaEDTA, pH 13). To allow uncoiling of DNA, the slides were kept in the high pH buffer for 20 minutes. Subsequently, electrophoresis was carried out for 20 minutes at 25 V and 300 mA. The slides were then drained and flooded slowly with 3 changes of neutralization buffer (0.4 M Tris, pH 7.5) for 5 minutes each, and then stained with 30 ml of ethidium bromide (20 mg/l) and covered with cover slips. All those steps were performed under dimmed light to prevent additional DNA damage caused by visible light. A total of 50 randomly selected cells per slide were analyzed. Imaging was performed with a fluorescence microscope (Zeiss Axiovert L410 Inc., Jena Germany), attached to a digital camera (Olympus Inc., Tokyo, Japan), and equipped with a 549 nm excitation filter, 590 nm barrier filter, and a 100-W mercury lamp. The percentage of DNA in the comet tail ("DNA damage") was automatically calculated using a ‘Toolbox’ from the IN Cell Investigator analysis package (GE Healthcare Life Sciences). Tail moment was calculated as a product of tail length multiplied by tail % damage.
Measurement of colon microbiota
Hamsters’ caecum samples were collected in sterile tubes with clindamycin- induced ileocecitis and immediately frozen at −70°C. The frozen tubes were sent to a microbiology laboratory for analysis. The process of bacterial cultivation involved the use of optimal artificial media and incubation conditions to isolate and identify the colon microbiota of an animal as rapidly and as accurately as possible.
Stools were usually watery, with a characteristic foul odour, mucoid and soft. Gross blood in stool did occur in some cases. Five different media were employed to isolate colon microbiota. Stool samples were diluted in glycerol transport broth  to yield a 1/10 dilution. Five percent sheep blood agar (BAP), MacConkey agar (MAC), Muller Hinton agar (MHA), Saboraud’s Dextrose agar (SDA) (as selective medium for yeast) and modified cefoxitin cycloserine fructose agar (CCFA) (as selective medium for C. difficile) were used in the present study. For the quantification of C. difficile, a sample of 0.1 ml of serial dilution was plated on CCFA and incubated at 37°C for at least 72 h in the anaerobic jar . For other aerobic microorganisms, portions of 0.1 ml of 10-2, 10-3, and 10-4 dilutions were plated with a glass spreader on to BAP, MAC, MHA, and SDA. The inoculated plates were incubated at 37°C for 2 days in aerobic conditions.
Colonies of C. difficile growing on CCFA, and blood agar were examined under long-wavelength ultraviolet light (Mineralite UVSL-25; Ultraviolet Products, Inc., San Gabriel, Calif.) for fluorescence. Whenever fluorescence, colonial morphology, or Gram stain morphology was characteristic of C. difficile, the isolate was identified by the criteria outlined in the Anaerobe Laboratory Manual . Yellow fluorescence of the colonies of C. difficile on CCFA could be detected after 24 h of incubation and persisted for 5 to 6 days.
MAC or MHA and BAP media are recommended as primary plating media for most routine aerobic bacteriologic cultures. On Muller-Hinton agar plates, several bacterial species that were cultured under aerobic condition from stool samples, before and after treatment of hamsters with clindamycin, included Streptococcus, Staphylococcus aureus, Klebsiella pneumoniae, and Pseudomonas aeruginosa. There was an overgrowth of Candida albicans on SDA agar plates.
Identification of microorganisms of clinically significant streptococci (β hemolysis species), staphylococci, and a selected group of Gram-positive bacilli could be detected on blood agar plates after the treatment of hamsters with clindamycin. Enterobacteriaceae (lactose fermenter microorganisms) were detected on MacConkey agar media after administration of clindamycin to hamsters.
Quantitative study of bacterial flora
The quantification of culture-based methods was based on a scale of ++++, defined as:
0 = no growth, < 103 colony forming units/gram of feces
+ = Rare, less than 103 colony forming units/gram of feces
++ = Few, 103 - 104 colony forming units/gram of feces
+++ = Moderate 105 - 106 colony forming units/gram of feces
++++ = Heavy > 106 colony forming units/gram of feces
(Colony-forming unit (CFU) is a measure of viable bacterial or fungal numbers. Unlike direct microscopic counts where all cells, dead and living, are counted, CFU measures viable cells) For each dilution, the number of colony forming units on the plates were counted. Typically, numbers between 30 and 300 were used to estimate the culture count.
The data were analyzed using the statistical package for social sciences (IBM Corp., New York, NY, USA). The results were expressed as mean ± S.D. All statistical comparisons between the control and PA-treated hamster groups were performed with the one-way ANOVA test complemented with Dennett test for multiple comparisons. P < 0.05 was statistically significant. ROC analysis was performed. Area under the curve (AUC), cutoff values, and degree of specificity and sensitivity were calculated.
Results and discussion
Estimation of clindamycin-induced changes in cecal flora of hamster
Media used and incubation conditions
MHA/aerobic; 37°C/24 h
MAC/aerobic; 37°C/24 h
BAP/aerobic; 37°C/24 h
SDA/aerobic; 25°C/48 h
CCFA/anaerobic; 37°C/72 h
The induction of pathogenic bacteria in hamsters that received clindamycin could be related to the etiology of autistic biochemical characteristics previously induced in rats that received oral propionic acid, a metabolite of some pathogenic enteric bacteria . It is well documented that autistic patients show bacterial overgrowth, possibly due to excessive use of oral antibiotics (e.g. clindamycin), which can alter gut flora [24–27]. Oral antibiotics are commonly used by autistics for treating otitis media (ear infections), which occurs frequently in these patients. This observation may suggest an impaired immune system, a biochemical feature related to PA induced brain toxicity in rats . Commonly used oral antibiotics eliminate almost all of the normal gut microbiota, which play an important role in the breakdown of plant polysaccharides, promoting gastrointestinal motility, maintaining water balance, producing some vitamins, and competing against pathogenic bacteria. Thus loss of normal gut flora with clindamycin could result in the overgrowth of pathogenic flora identified in Table 1. This observation is supported by Buffie et al’s  study that found a single dose of clindamycin results in the reduction of the normal diversity of the intestinal microbiota for at least 28 days and induces sustained susceptibility to C. difficile toxins such as propionic acid.
DNA damage induced in cortex and medulla of PA-treated, Clindamycin-treated, carnosine and carnitine protected groups
Tail length (μm)
Tail DNA %
0.97 ± 0.24
0.96 ± 0.33
0.98 ± 0.59
1.12 ± 0.24
1.03 ± 0.32
1.21 ± 0.57
6.80 ± 0.74**
6.10 ± 0.20**
41.51 ± 5.09**
7.27 ± 1.33**
6.67 ± 0.99**
1.81 ± 0.32*
1.71 ± 0.36*
3.16 ± 1.26*
1.75 ± 0.29*
1.64 ± 0.40
2.95 ± 1.25
1.10 ± 0.14
1.05 ± 0.20
1.18 ± 0.36
1.15 ± 0.15
1.00 ± 0.10
1.16 ± 0.27
1.25 ± 0.07
1.13 ± 0.09
1.42 ± 0.19
1.28 ± 0.03
1.07 ± 0.14
1.37 ± 0.17
3.96 ± 0.09**
3.87 ± 0.45**
15.34 ± 2.11**
3.83 ± 0.27**
3.69 ± 0.32**
14.19 ± 2.24**
3.50 ± 0.60**
3.37 ± 0.47**
11.96 ± 3.80*
2.85 ± 0.27**
2.63 ± 0.28**
7.56 ± 1.46**
1.58 ± 0.10*
1.42 ± 0.09
2.25 ± 0.29*
1.68 ± 0.07*
1.23 ± 0.12
2.07 ± 0.12
1.73 ± 0.20*
1.54 ± 0.11*
2.67 ± 0.50*
1.70 ± 0.21*
1.52 ± 0.06
2.60 ± 0.39*
Thus, clindamycin induced DNA damage could be attributed to the overgrowth of anaerobic bacteria, e.g. Clostridium that has recently been implicated as a causative factor involved in the etiology of autism . This observation is supported by stool studies, which proved that certain Clostridia were important and that siblings of autistic children show intermediate Clostridia growth between healthy controls and their affected siblings [8, 30].
It has been proposed that oxidative stress is related to a time-dependent shift in the antioxidant/prooxidant balance towards oxidative damage. Increased production of oxidants in vivo can cause damage to intracellular macromolecules such as DNA, proteins and lipids, which can in turn lead to oxidative injury. Additionally, the increased nuclear DNA damage in PA and clindamycin treated animals could be related to oxidative stress status in both groups of hamsters compared to the healthy control group. Oxidative damage by a reactive oxygen species (ROS) producing toxicity can affect DNA integrity to a different extent [31, 32]. This is consistent with a recent study by El-Ansary et al., which reported increased lipid peroxides as an index of oxidative stress, coupled with depletion of reduced glutathione and lower catalase and glutathione peroxidase activities in PA-treated rat pups.
Carnitine is a vitamin-like compound that serves as a carrier to transport long-chain fatty acids (e.g. propionic acid) into the mitochondria for beta-oxidation. In the present study, the effect of L-carnitine, a widely recognized essential nutrient, was evaluated on the status of DNA damage induced in hamsters. Table 2 also demonstrates the potency of L-carnitine in protecting against PA neurotoxicity. It ameliorates the DNA damaging effects of both treatments especially in PA-treated hamsters which had a 400% recovery for the cortex and 280% recovery for the medulla. This finding supports a recent study by Ribas et al. who reported that propionic acidemia leads to severe metabolic complications in the neonatal period and to long-term neurological manifestations. They  evaluated the in vitro effects of PA with or without L-carnitine, on DNA damage in peripheral leukocytes, as determined by alkaline comet assay. PA induced DNA damage index (DI) was significantly higher than the control group . L-carnitine significantly reduced the PA induced DNA damage, in a concentration-dependent manner . Administration of L-carnitine significantly decreased the levels of lipid peroxides and improved the activities of antioxidant enzymes such as superoxide dismutase, catalase, glutathione peroxidase and glutathione reductase . This group of antioxidant enzymes are affected by PA neurotoxicity and are clinically impaired in autistic patients compared to controls . Additionally, a protective effect of carnitine reported in the present study is likely due to L-carnitine enhanced T-cell proliferative response and significantly reduced DNA damage, apoptosis and TNF-alpha levels in the lymphocytes of aged animals  and in the brain of PA-intoxicated rat pups (unpublished work).
Table 2 demonstrates the effect of carnosine in inducing 300% and 350% recovery for PA-intoxicated cortex and medulla respectively. The remarkable protective effect of carnosine reported in the present study concurs with reports. Carnosine performs critical biological functions, in particular, antioxidant properties directed at the suppression of free radical reactions [35, 36]. It is well known that the imidazolium group of histidine or carnosine stabilizes adducts formed at the primary amino group and may perform a crucial function as an anti-crosslinking agent . The results of many biochemical studies have suggested that carnosine harbours free radical-scavenging activity, which may partly explain its apparent homeostatic functions [38, 39]. Recently, in vitro and in vivo studies have shown that carnosine can exert neuroprotective effects via a variety of mechanisms . It has been reported that carnosine quenches 50–95% of the hydroxyl radicals generated in the Fenton reaction . Therefore, it was suggested that the ability of carnosine to inhibit ferritin-mediated DNA damage was likely attributable to free radical-scavenging activity. In a more recent study, carnosine was reported to protect neurons from lipid peroxide-induced cell injury .
The low or non-significant effects of both carnitine and carnosine in case of clindamycin-treated samples could be attributed to the metabolic activity of the induced growth of bacteria. Bacterial metabolic activity expressed as the fermentation profile, or short-chain fatty acid profiles, may reduce the sensitivity of colonocytes to both agents [43, 44].
ROC-curve results for tail moment of brain cortex and medulla of the different studied groups showing AUC, best cut-off values, specificity and sensitivity
Area under the curve
Best cutoff value
Pearson correlations coefficients and significance levels between DNA %, tail length and tail moment in cortex and medulla
R (Person correlation)
Tail length ~ Tail DNA %
Tail length ~ Tail moment
Tail moment ~ Tail DNA %
Tail length ~ Tail DNA %
Tail length ~ Tail moment
Tail moment ~Tail DNA %
Based on this study, we can suggest that the general abuse of antibiotics leads to overgrowth of Clostridia species as PA producers. The more pronounced effects of orally administered PA compared to clindamycin-treated hamsters observed in the present study could be attributed to the effect of diet which undoubtedly plays a major role in PA production as a bacterial metabolite .
Stated differently, key factors in the virulence of bacterial overgrowth and its mechanism leading to autism are the production of PA as an enteric bacterial fermentation product that is usually increased in the presence of a high carbohydrate diet . Based on this study, a diet excluding complex carbohydrates or diets high in anti-oxidants (e.g. carnitine and/or carnosine) may subjectively give positive results in controlling the increasing prevalence of autism. This conclusion is admittedly tough to prove mechanistically and requires further study emphasizing the role of the gut-brain axis in the pathoetiology of autism .
This research project was supported by a grant from the research centre for female scientific and medical colleges in King Saud University.
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